PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27649
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 255aa    MW: 28233.2 Da    PI: 6.6101
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27649genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-10137183454
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++YI+sL
  Tp57577_TGAC_v2_mRNA27649 137 SHSLAERARREKISERMKTLQDLVPGC----NKVIGKALVLDEIINYIQSL 183
                                8*************************9....677***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.39E-10131188No hitNo description
SuperFamilySSF474591.2E-17131201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-18133201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.082133183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-8137183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-10139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDPAPIINAA PNTPSYHLPE IWNFPPSKTP HFSHDFGDFA MEDPGTEQKP LNYGRKRRDT  60
VEDLVKGIST SNGGGNSNAV NDGGGGDGKR SKTRNESNKG EGEENSSGKH AEETSDQPNP  120
KQDYIHVRAR RGQATDSHSL AERARREKIS ERMKTLQDLV PGCNKVIGKA LVLDEIINYI  180
QSLHHQVEFL SMKLEAVNSR LTPGIEMYPP KDFDQQRYDT TAIPFASQAT REYSRGSSPE  240
WLHMQLGGGF ERAT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27649
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1466840.0BT146684.1 Medicago truncatula clone JCVI-FLMt-9L20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489951.11e-137transcription factor BHLH094-like
SwissprotQ69WS34e-72BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A2K3MVM10.0A0A2K3MVM1_TRIPR; Transcription factor BPE-like protein
STRINGXP_004489951.11e-136(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-80BIG PETAL P