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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Tp57577_TGAC_v2_mRNA27608 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family |
C2H2 |
Protein Properties |
Length: 257aa MW: 28521.7 Da PI: 6.5833 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Tp57577_TGAC_v2_mRNA27608 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 13.1 | 0.00028 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C + F ++ L H++ H
Tp57577_TGAC_v2_mRNA27608 83 FSCNYCRRKFYSSQALGGHQNAH 105
89*****************9988 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 257 aa
Download sequence Send
to blast |
MRPIFDLEVE ATEEYESDVA SNTSPNSSIL TNPTELNPHS DPISLDLSLN FNIHNDLVAR 60 DSAGISISST SEGSNEPIIP RVFSCNYCRR KFYSSQALGG HQNAHKRERT LAKRAMRMGL 120 FAERYTSLAS LPLNGNSFRS LGIKTHSSLH HGFSPPTIRP VQEIKSNVRF KQGCIGHPIL 180 LEDDETELFW QGSFHQVTEG GRVGSTHRTL SNHTSDFDPR ESNTRQSSNL CFTEVNVKPL 240 VDNIDLNSAP ELTLKL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC148818 | 1e-145 | AC148818.15 Medicago truncatula clone mth2-39c7, complete sequence. |
GenBank | BT137756 | 1e-145 | BT137756.1 Medicago truncatula clone JCVI-FLMt-15N18 unknown mRNA. |
GenBank | CR940306 | 1e-145 | CR940306.3 M.truncatula DNA sequence from clone MTH2-10B11 on chromosome 3, complete sequence. |