PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27493
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 297aa    MW: 34157.5 Da    PI: 8.4643
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27493genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52e-12857455
                               HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                               +h+e E++RR+++ +    Lr+llP       ++K s ++ + +A++YI++Lq
  Tp57577_TGAC_v2_mRNA27493  8 MHKETEKQRRQEMANLCTSLRSLLPLeY---IKGKRSISDHVNEAINYINHLQ 57
                               7*************************77...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.402456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-14576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.29E-11561No hitNo description
Gene3DG3DSA:4.10.280.103.9E-10672IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-41062IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000781.1E-16160292IPR000477Reverse transcriptase domain
SuperFamilySSF566723.26E-5174291No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEDVKKWMHK ETEKQRRQEM ANLCTSLRSL LPLEYIKGKR SISDHVNEAI NYINHLQNNV  60
KQLQDKKEDL MKVSNLNNIH HQNGSTTSTN LQPFVIVQPF PGGLEIVCSY TSKTCLFPLS  120
RVLDMLLKEG LNVISSNSSK IDGRFIYTIR SEDPIMSGID YSQLQRKLTD AILSSSTFLP  180
HRQIFDGVVV VNELIDIAKR RKQHCFMMKV DFEKVYDTIS WSYLEDMMRR MGFSDIWIKW  240
MRACIFNSSM SILVNGSPTV DFKVGKGLRQ DDQLSPFLFL IAAEGLTRMI LQFADD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27493
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630580.13e-97transcription factor bHLH36
TrEMBLA0A396HJA87e-96A0A396HJA8_MEDTR; Putative transcription factor bHLH family
STRINGXP_004506301.11e-86(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.12e-35bHLH family protein