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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA27365 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 159aa MW: 17998.2 Da PI: 9.3537 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 69.2 | 7.5e-22 | 34 | 85 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr+++ +g+++AeIrdps++g +r++lg+f+taeeAa+a+++a+ +l+g+ Tp57577_TGAC_v2_mRNA27365 34 RFRGVRRRP-WGKYAAEIRDPSKQG--TRIWLGTFDTAEEAARAYDRAAFNLRGH 85 69*******.**********98865..**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.9E-32 | 34 | 93 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-15 | 34 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.04E-31 | 34 | 92 | No hit | No description |
PROSITE profile | PS51032 | 24.513 | 34 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-38 | 34 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-24 | 35 | 93 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-11 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MRNICHTQEE TKLMEDHLKG KQGKEEKAGK DEVRFRGVRR RPWGKYAAEI RDPSKQGTRI 60 WLGTFDTAEE AARAYDRAAF NLRGHLAILN FPSEYYSKIR GSPPYPPHLA PPSYTSSSSH 120 HASGSSSGPQ HRPIFEFECL DDKILEELLG SEEVKKKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-31 | 28 | 144 | 8 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA27365 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013468695.1 | 3e-76 | ethylene-responsive transcription factor ERF098 | ||||
Swissprot | Q9LTC5 | 5e-49 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2K3L6X5 | 1e-102 | A0A2K3L6X5_TRIPR; Ethylene-responsive transcription factor erf098-like protein | ||||
STRING | GLYMA20G34560.1 | 4e-69 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 4e-37 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA27365 |
Publications ? help Back to Top | |||
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