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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA27353 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 162aa MW: 18419.3 Da PI: 8.4117 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 41 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrd + + +r++lg+f taeeAa+a+++a+ +++g Tp57577_TGAC_v2_mRNA27353 41 RYRGVRCRP-WGKFAAEIRDS---NrQGQRVWLGTFNTAEEAARAYDRAAYNMRG 91 6*****999.**********4...3345*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.2E-15 | 41 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-31 | 41 | 101 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-33 | 41 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-23 | 41 | 100 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.827 | 41 | 99 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.79E-17 | 41 | 100 | No hit | No description |
PRINTS | PR00367 | 8.2E-11 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-11 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MNKTFQYRQL FFSLEPSYDQ HVPLILTKLS YTMSEDGGHV RYRGVRCRPW GKFAAEIRDS 60 NRQGQRVWLG TFNTAEEAAR AYDRAAYNMR GSFAILNFPN EYNMPTRAGS GATSASSSSS 120 SSSSRNTNVE GRGRQVFEIE YFDDNLLEEL LDFEEKRNKG P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-38 | 39 | 160 | 12 | 128 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA27353 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013468688.1 | 5e-48 | ethylene-responsive transcription factor ERF096 | ||||
Swissprot | Q9LTC5 | 1e-39 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2K3NET6 | 7e-55 | A0A2K3NET6_TRIPR; Ethylene-responsive transcription factor erf098-like protein | ||||
STRING | XP_004495317.1 | 1e-43 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43410.1 | 9e-25 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA27353 |
Publications ? help Back to Top | |||
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