PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA27308

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

M-type_MADS

Protein Properties

Length: 314aa MW: 36199.1 Da PI: 8.3871

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA27308	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	52.1	8.6e-17	13	51	5	43
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 + rq tf R+ng++KK +ELS+LCd++v+vi+++++ Tp57577_TGAC_v2_mRNA27308 13 KEKSRQKTFLTRKNGLMKKVKELSTLCDVDVCVILYAPN 51 567899******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.8E-18	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	20.002	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.32E-20	2	90	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.13E-21	2	78	No hit	No description
PRINTS	PR00404	5.6E-11	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-16	12	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-11	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-11	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MGRGRISMKL VQKEKSRQKT FLTRKNGLMK KVKELSTLCD VDVCVILYAP NFQGQGFVEP 60 ETWPKDPSEV QSVLQKYYNT TNDRRLRIYD IQEYFKGKMK KVESEIFNVH KKMLKVMYPT 120 WNESFNSFGE EQLRLFASML DSKLDACNQR MNMLKGDHNG KAITESHKVD KLPNSNTPYL 180 TSNPSSYFNL MQNNFSIISD KNPFEFWPLE LGQMSSQPSS MFSGAQGSYQ LQSYPYSHVD 240 ANWAHQVGAN VTYDPKIDTK MKDGAENAEN LSSYYYNGNT PAMQSYHHNA MQTLPFDQNL 300 PNLMDFNLMD FMI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA27308

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004516685.1	1e-137	MADS-box transcription factor 20-like
TrEMBL	A0A2K3PIC6	0.0	A0A2K3PIC6_TRIPR; MADS-box transcription factor
STRING	XP_004516685.1	1e-137	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	6e-25	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA27308