PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA27301 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 200aa MW: 20988.1 Da PI: 8.099 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 10 | 32 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C Cg++F+ ++L+ H+ + H Tp57577_TGAC_v2_mRNA27301 10 ACDQCGEVFPKIESLELHQAVrH 32 69*****************9888 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 9 | 32 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.995 | 9 | 37 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.90.228.10 | 5.0E-8 | 44 | 189 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
SuperFamily | SSF56399 | 3.07E-15 | 44 | 190 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 200 aa Download sequence Send to blast |
LPIPRSTVCA CDQCGEVFPK IESLELHQAV RHADSVKSRA ASTTKKNPRC AADGNELLRF 60 HSTTLSCALG ARGSSALCAA VPGCGVCTII RHGFQNKGGV KTNASSGMAH DNSVGRIGED 120 SRRAMLVCRV IAGKVKRAAE EGAAPVTLEE ENVAFDSVAG NAGIYSNLED LTVFNPKAIL 180 PCFVVIYKEP DVTMSIKSL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA27301 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004499248.1 | 1e-102 | uncharacterized protein LOC101513058 | ||||
TrEMBL | A0A2Z6MNL7 | 1e-120 | A0A2Z6MNL7_TRISU; Uncharacterized protein | ||||
STRING | XP_004499248.1 | 1e-102 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10341 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75710.1 | 5e-67 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA27301 |