PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA27216 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 27235.2 Da PI: 6.7314 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.9 | 6.1e-10 | 24 | 69 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT e+d+l+ +a + + + +W++Ia+ ++ g++ ++++++ + Tp57577_TGAC_v2_mRNA27216 24 QWTREDDKLFERALLMVPEDlpnRWEKIAEQVP-GKSVAEVRDHYED 69 6*****************99*************.***********76 PP | |||||||
2 | Myb_DNA-binding | 46.7 | 7.5e-15 | 129 | 173 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + + +G+g+W++I+r + +Rt+ q+ s+ qky Tp57577_TGAC_v2_mRNA27216 129 PWTEEEHRLFLVGLTTYGKGDWRSISRNVVVTRTPTQVASHAQKY 173 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.865 | 20 | 74 | IPR017884 | SANT domain |
SMART | SM00717 | 1.2E-8 | 21 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.07E-12 | 23 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-9 | 24 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-6 | 24 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.28E-8 | 25 | 71 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-11 | 119 | 174 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.47 | 122 | 178 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.38E-16 | 124 | 178 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.8E-17 | 125 | 177 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.6E-11 | 126 | 176 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.30E-9 | 129 | 174 | No hit | No description |
Pfam | PF00249 | 5.1E-12 | 129 | 173 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MYQKTIPMAT ATAATTRWPT QPTQWTREDD KLFERALLMV PEDLPNRWEK IAEQVPGKSV 60 AEVRDHYEDL VHDVLEIELG RVEVPSYPDD LAAVSGGGGG GLSDWDSSNQ ISFGSKNRNS 120 DNERKKGTPW TEEEHRLFLV GLTTYGKGDW RSISRNVVVT RTPTQVASHA QKYFLRQSAV 180 KKERKRSSIH DITSVDTNKA PMPIDQNWVP PPGGQPQQNH HYPSNNLHDQ MGSFGYSNYG 240 F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-13 | 14 | 87 | 2 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA27216 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013470249.1 | 1e-134 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 2e-59 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
Swissprot | Q9FNN6 | 1e-59 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A2Z6LJX8 | 1e-159 | A0A2Z6LJX8_TRISU; Uncharacterized protein | ||||
STRING | AES84368 | 1e-134 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6068 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 6e-72 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA27216 |
Publications ? help Back to Top | |||
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