PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26903
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 318aa    MW: 35905.6 Da    PI: 7.0329
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26903genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21e-11146193355
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                + h ++Er+RR+++  +f  L  ++P +     kK++Ka++L  A++Y+k+L+
  Tp57577_TGAC_v2_mRNA26903 146 QEHVMAERKRREKLTRSFIALSAIVPGL-----KKMDKASVLGDAIKYMKQLK 193
                                6799************************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.516143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9146192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16147206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-16147205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-12148197No hitNo description
SMARTSM003536.1E-14149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MMEIMSPIYL PELGMEDLNF LHQYPMDSLA SDAFDNFGFH FDNNYETTPN CFPVETHQPN  60
DNYVAQTRPT KKIKTSSTNP SSYSSTPQLI SFEQFNATPI VSNKEFYGLD YSDVKPKFEK  120
GCSTNKDFPA NYDNRANQTR NTTQAQEHVM AERKRREKLT RSFIALSAIV PGLKKMDKAS  180
VLGDAIKYMK QLKARLQTLE EQVEDNKKVG STVQVKRSVI FIDNNDHDDN NKRTLLPEIE  240
VRVSSKDVLI KIQCDKQSGR AATVLGQLEN LNLIVQSSNF LPFGNNMLDV TIVAQMNKEN  300
CVTAKDLLGS IRQALIN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156ERKRRE
2152157RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26903
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611502.21e-169transcription factor bHLH18
TrEMBLG7K1341e-168G7K134_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES944601e-151(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-47bHLH family protein