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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA26884 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | B3 | ||||||||
Protein Properties | Length: 180aa MW: 19906.7 Da PI: 9.1725 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.3 | 6.4e-14 | 110 | 180 | 1 | 77 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k l++s+v + ++ lp f+++h + +++t+tledesgr+++ k+i +k++ l++GW++F ++L eg Tp57577_TGAC_v2_mRNA26884 110 FVKSLVRSHVASCFWMGLPVAFCKRHLPD--KDTTITLEDESGREYKTKYIACKTG----LSAGWRQFSAVHKLLEG 180 89************************534..5679***************777776....*************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.8E-15 | 102 | 180 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.22E-17 | 104 | 180 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.58E-20 | 108 | 180 | No hit | No description |
Pfam | PF02362 | 5.9E-11 | 110 | 180 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-5 | 110 | 180 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.588 | 110 | 180 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MATQYDDGGV TVAFHGREVY EGVPISHFSK KSPLNNLQDK QNKAAENKYK LLNSPTTQSS 60 LMVKTWNIIF DCSSNKVTTD GALSRGEAIS SAVIQAEGLK SNLKPEFPSF VKSLVRSHVA 120 SCFWMGLPVA FCKRHLPDKD TTITLEDESG REYKTKYIAC KTGLSAGWRQ FSAVHKLLEG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA26884 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004509147.1 | 1e-83 | B3 domain-containing protein Os01g0234100-like | ||||
Swissprot | Q5KQI4 | 2e-30 | Y5814_ORYSJ; B3 domain-containing protein Os05g0481400 | ||||
TrEMBL | A0A1S2YSD0 | 2e-82 | A0A1S2YSD0_CICAR; B3 domain-containing protein Os01g0234100-like | ||||
STRING | XP_004509147.1 | 4e-83 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1007 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-27 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA26884 |
Publications ? help Back to Top | |||
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