PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA2688

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C3H

Protein Properties

Length: 147aa MW: 16706.9 Da PI: 7.1329

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA2688	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.4e-07	72	92	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++f tG+C+yGd+Ck+ H+ Tp57577_TGAC_v2_mRNA2688 72 CSHFINTGFCRYGDSCKYFHP 92 ******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.56E-14	18	65	No hit	No description
Pfam	PF06220	1.1E-9	19	53	IPR013085	Zinc finger, U1-C type
PROSITE profile	PS50103	15.338	66	94	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.1E-7	69	94	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-4	72	92	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-5	72	91	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MLLLIGMMIL CVSQCLDKNY YCEYCEKQFQ DTPSDRKRHS AGIQHQQAKA RWYDSFKPQQ 60 HNPNIPPNQP FCSHFINTGF CRYGDSCKYF HPNTNNNIQQ QHQPIINNTP GDVVVESMGL 120 SLGNLPPSLQ PPPEGGYPHI PFVDWG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA2688

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004495629.1	1e-62	zinc finger CCCH domain-containing protein 3
Refseq	XP_004495630.1	1e-62	zinc finger CCCH domain-containing protein 3
Swissprot	Q0JP11	3e-34	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A2K3KEB0	1e-90	A0A2K3KEB0_TRIPR; Zinc finger CCCH domain-containing protein 3-like
STRING	XP_004495629.1	5e-62	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11959	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	8e-27	C3H family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA2688

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]