PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26841
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 312aa    MW: 35145 Da    PI: 6.7593
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26841genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-05129148120
                                EEETTTTEEESSHHHHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                ++C+ C+k+F+r  n++ H+
  Tp57577_TGAC_v2_mRNA26841 129 FSCTVCNKMFNRFNNMQMHM 148
                                89*****************9 PP
2zf-C2H213.80.00017214236123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                + C +Cgk+F  + + ++H +++
  Tp57577_TGAC_v2_mRNA26841 214 FGCRKCGKPFAVRGDWRTHEKNC 236
                                56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.53E-5125150No hitNo description
PROSITE profilePS501579.889129156IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.0E-5129148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
SuperFamilySSF576671.41E-5197234No hitNo description
Gene3DG3DSA:3.30.160.607.1E-5200234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MQAHTFSYIS SLQTNETVDE SSISLSLGPP GTHHLKHKLS SSSNHSATST TTTHHHHQIQ  60
HQKQNFTIDD DDDDEVSGVT VALHIGLPNT ISQNNTPVRK SDHHLASTPI QSQYWIPSPA  120
QILIGPTQFS CTVCNKMFNR FNNMQMHMWG HGSQYRKGPE SLRGVKPASS MLRLPCYCCA  180
EGCKNNIEHP RSRPLKDFRT LQTHYKRKHG AKPFGCRKCG KPFAVRGDWR THEKNCGKLW  240
FCICGSDFKH KRSLKDHVRA FGDGHAPHTV ESCEDQDVLL GDEYDEEFDG DEIDEDDDDD  300
DNIDGMVFGF N*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26841
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1481550.0AC148155.18 Medicago truncatula clone mth2-9p11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024641056.11e-175zinc finger protein WIP6-like
SwissprotQ9FX681e-117ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2K3N1B70.0A0A2K3N1B7_TRIPR; Protein TRANPARENT TESTA 1-like (Fragment)
STRINGAES974241e-174(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-114C2H2-like zinc finger protein