|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Tp57577_TGAC_v2_mRNA26793 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
Family |
NAC |
Protein Properties |
Length: 350aa MW: 40702.2 Da PI: 6.7009 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Tp57577_TGAC_v2_mRNA26793 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 180 | 6.3e-56 | 14 | 144 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksg 81
+ppGfrFhPtdeelv++yL+kk+++k+++l ++ik+vd+yk+ePwdL++ k+ + e++ewyfFs++dkky+t++r+nratk+g
Tp57577_TGAC_v2_mRNA26793 14 VPPGFRFHPTDEELVDHYLRKKIASKRIDL-DIIKDVDLYKIEPWDLQElcKIGSdEQTEWYFFSHKDKKYPTSSRTNRATKAG 96
69****************************.99**************954555553455************************* PP
NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
+Wkatg+dk+++s++ +l+g++ktLvfykgrap+g+k+dW+mheyrle
Tp57577_TGAC_v2_mRNA26793 97 FWKATGRDKAIYSNHISLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 144
*************999******************************85 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 350 aa
Download sequence Send
to blast |
LNLNYINMNN FSHVPPGFRF HPTDEELVDH YLRKKIASKR IDLDIIKDVD LYKIEPWDLQ 60 ELCKIGSDEQ TEWYFFSHKD KKYPTSSRTN RATKAGFWKA TGRDKAIYSN HISLIGMRKT 120 LVFYKGRAPN GQKSDWIMHE YRLETNENGT TPQEEGWAVC KVFKKRIAST MMRRMDDSPC 180 GYDDQVSFMQ SELESSPNRI SHASYQQHYP CKQEYYDRFQ YNIVINNDAN NFLQLPQLES 240 PKIPNNFQCS SSSTSHSLTT HQEQQYYSHQ QNMQMLYGGS NNDNQASAGL VEQSRDWRVL 300 DKFVASQLSH DQDASKESTS YCNVDEQIAL LASDESKKSE TSQIDHMWK*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | CR962129 | 1e-104 | CR962129.2 Medicago truncatula chromosome 5 clone mth2-28m4, COMPLETE SEQUENCE. |