PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA26380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 87aa MW: 10073.9 Da PI: 9.8704 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.8 | 1.1e-14 | 5 | 81 | 20 | 99 |
HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 kfa ++ ++ + + ++l++ +g++Wev + + +ks ++ ++kG +F +n+L +gD++vF+l++++ l+v++fr+ Tp57577_TGAC_v2_mRNA26380 5 SKFAPKYLKP-N--VPIKLQNCHGEQWEVFCVFYNKSLGMRIRKGFPKFQMDNNLSTGDICVFELIKKEPVVLKVTMFRA 81 6778777333.2..459****************99999****************************99999999999986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.701 | 1 | 82 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.86E-14 | 1 | 80 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-14 | 1 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.01E-14 | 4 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.0E-12 | 5 | 81 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 87 aa Download sequence Send to blast |
LNVTSKFAPK YLKPNVPIKL QNCHGEQWEV FCVFYNKSLG MRIRKGFPKF QMDNNLSTGD 60 ICVFELIKKE PVVLKVTMFR AVDYRD* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA26380 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024640216.1 | 4e-33 | B3 domain-containing transcription factor VRN1 isoform X2 | ||||
TrEMBL | A0A2Z6NIC4 | 5e-34 | A0A2Z6NIC4_TRISU; Uncharacterized protein | ||||
TrEMBL | A0A2Z6P5U6 | 6e-34 | A0A2Z6P5U6_TRISU; Uncharacterized protein | ||||
STRING | AES98603 | 3e-32 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14054 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49480.1 | 4e-12 | related to vernalization1 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA26380 |