PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2597
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 163aa    MW: 18562.9 Da    PI: 8.4718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2597genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-194696255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                              +y+GVr ++ +g+++AeIrd      ++ +r++lg+f taeeAa+a+++a+ +++g
  Tp57577_TGAC_v2_mRNA2597 46 KYRGVRVRP-WGKFAAEIRD----SaRHgARVWLGTFNTAEEAARAYDRAAFNMRG 96
                              8********.**********....33236*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-3646110IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-2346106IPR016177DNA-binding domain
CDDcd000181.65E-2946105No hitNo description
Gene3DG3DSA:3.30.730.102.7E-3146105IPR001471AP2/ERF domain
PfamPF008477.1E-154696IPR001471AP2/ERF domain
PROSITE profilePS5103223.35446104IPR001471AP2/ERF domain
PRINTSPR003674.2E-114758IPR001471AP2/ERF domain
PRINTSPR003674.2E-117086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
LIHFQISAFF VPQYKRLSND ANILVHTMGD EIKEKVKEGE LQKQIKYRGV RVRPWGKFAA  60
EIRDSARHGA RVWLGTFNTA EEAARAYDRA AFNMRGSSAI LNFPHEHFPS KPSSSSSSNS  120
TSSSAKVKSK LDEQVIEFEY LDEKLLEELL DCENTINHNW FK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-354614514114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2597
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493770.11e-52ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2K3LK791e-66A0A2K3LK79_TRIPR; Ethylene-responsive transcription factor erf098-like protein
STRINGXP_004493770.15e-52(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.12e-27ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]