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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA25932 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 25918.3 Da PI: 7.027 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52 | 1.8e-16 | 64 | 114 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +Wv+e r+p +k+++++lg+f tae+Aa+a++ a+++l+g Tp57577_TGAC_v2_mRNA25932 64 PVYRGVRRRN-LDKWVCEMREP---NKKTKIWLGTFPTAEMAARAHDVAALALRG 114 68*****887.9******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-12 | 64 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-21 | 65 | 124 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.707 | 65 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-27 | 65 | 128 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.4E-31 | 65 | 124 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.63E-29 | 66 | 124 | No hit | No description |
PRINTS | PR00367 | 7.1E-8 | 66 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-8 | 88 | 104 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MFPTNNSSSS HPISSIPSSS SHKISLPNLD VSHGMSTSNE EVRLAASTPK KRAGRKKFKE 60 TRHPVYRGVR RRNLDKWVCE MREPNKKTKI WLGTFPTAEM AARAHDVAAL ALRGRNACLN 120 FADSAWRLRM PTTTNTKDIQ KAASEAAEAF RPNKTLMVND TDTIEVVAAI EEPERLIFSM 180 EEEEEGELNI PESLKNMALM SPTHSLGHEY EHIDHVDFQD VEVSLWSFSI * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00557 | DAP | Transfer from AT5G51990 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA25932 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013452589.1 | 1e-111 | dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q9FJ93 | 3e-66 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A2K3LCS6 | 1e-142 | A0A2K3LCS6_TRIPR; Ap2/erf domain-containing transcription factor | ||||
STRING | GLYMA09G27180.2 | 5e-86 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 1e-55 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA25932 |
Publications ? help Back to Top | |||
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