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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA25920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 260aa MW: 29833.1 Da PI: 9.0434 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.2 | 3.1e-16 | 82 | 132 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ + +Wv+e r+p +k+++++lg+f t e+Aa+a++ a+ +l+g Tp57577_TGAC_v2_mRNA25920 82 PVYRGVRRRN-NDKWVCEMREP---NKKTKIWLGTFPTVEMAARAHDVAAMALRG 132 68*****887.8******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.4E-13 | 82 | 132 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.995 | 83 | 140 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-29 | 83 | 142 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-21 | 83 | 142 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-25 | 83 | 146 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.52E-27 | 84 | 142 | No hit | No description |
PRINTS | PR00367 | 5.3E-7 | 84 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-7 | 106 | 122 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
LLHNKLLSSF PTFTIKYQKD LLISHSHHHI NMFATNNSSS DMSLSNSDGS HWMPVSNEEM 60 RLAATTPKKR AGRKKFKETR HPVYRGVRRR NNDKWVCEMR EPNKKTKIWL GTFPTVEMAA 120 RAHDVAAMAL RGRYACLNFA DSVWRLPKPA TAQAKDIQKA ATLAAEAFRP KKTLLTNDND 180 ITVVVAAPKE QPMLCRDMPE LMSNMALMSS VHSLENSFYE EAELWRNMAL MSPTHSLEYY 240 DYEYVNEDFQ DAEISLWNF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA25920 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013452583.1 | 1e-104 | dehydration-responsive element-binding protein 1A | ||||
Swissprot | Q9FJ93 | 8e-57 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A2K3JMS9 | 1e-156 | A0A2K3JMS9_TRIPR; Ap2/erf domain-containing transcription factor | ||||
STRING | GLYMA09G27180.2 | 2e-79 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 2e-49 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA25920 |
Publications ? help Back to Top | |||
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