PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA25868

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bZIP

Protein Properties

Length: 303aa MW: 33615.9 Da PI: 5.8161

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA25868	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52.4	1.1e-16	232	281	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r++r++kNRe+A rsR+RK+a++ eLe kv Le+eN++L+ + +el+++ Tp57577_TGAC_v2_mRNA25868 232 RRQKRMIKNRESAARSRARKQAYTNELEIKVSRLEEENEMLR-KQKELENM 281 79****************************************.56777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.6E-15	220	278	No hit	No description
SMART	SM00338	6.2E-14	228	300	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.312	230	275	IPR004827	Basic-leucine zipper domain
CDD	cd14707	6.77E-23	232	278	No hit	No description
Pfam	PF00170	1.5E-13	232	275	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.19E-11	232	277	No hit	No description
PROSITE pattern	PS00036	0	235	250	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MGMQTMGSQG GGDGSGKRSQ LHSLVRENSM YSLTLDEVQN QLGDLGKPLS SMNLDELLKN 60 VWTVEVNQST NTDNEGTTQG SQASLQRQAS LSLKAPLSMK TVDEVWRDIQ QTKDNEEKKS 120 REKQPTLGEM TLEDFLVKAG IVAEASSDKT NTDTTAGIDS NVAVSQFPPQ GQWIHQGIAQ 180 PLHLGADASM EIPFTDSHMA LAAPLMGTVL DTQISGRKRS TPEDMVEKTV ERRQKRMIKN 240 RESAARSRAR KQAYTNELEI KVSRLEEENE MLRKQKELEN MLPVVPITEP KYQLRRIASS 300 PF*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA25868

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009698	8e-56	AP009698.1 Lotus japonicus genomic DNA, clone: LjT02O17, TM1725, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003628123.1	1e-175	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_024627504.1	1e-175	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	8e-89	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	G7L6Z1	1e-174	G7L6Z1_MEDTR; BZIP transcription factor
STRING	AET02599	1e-175	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	3e-85	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA25868

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]