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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA25558 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 141aa MW: 15703.2 Da PI: 6.8062 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.5 | 2.1e-20 | 21 | 72 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrdp+ +r++lg+f+taeeAa+a++aa+ ++g+ Tp57577_TGAC_v2_mRNA25558 21 KYRGIRRRP-WGKFAAEIRDPTRK--GTRIWLGTFDTAEEAARAYDAAAFHFRGH 72 8********.**********8542..4***********************99996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.3E-14 | 21 | 72 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.528 | 21 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-36 | 21 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-24 | 21 | 80 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.97E-19 | 21 | 80 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.9E-33 | 21 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-12 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-12 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MEGNRSISNS TNGNGNVDQI KYRGIRRRPW GKFAAEIRDP TRKGTRIWLG TFDTAEEAAR 60 AYDAAAFHFR GHRAILNFPN EYQAPSNSSS SSSLPMPLTS MPPPNPSSSS SYSVDDINFE 120 FEFFDNKLLQ ELLQDGTHNN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-30 | 21 | 128 | 14 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA25558 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT051449 | 2e-97 | BT051449.1 Medicago truncatula clone MTYF1_F2_F3_F41G-L-18 unknown mRNA. | |||
GenBank | BT145398 | 2e-97 | BT145398.1 Medicago truncatula clone JCVI-FLMt-16L17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004495105.1 | 1e-61 | ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 3e-37 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2K3L1N3 | 9e-69 | A0A2K3L1N3_TRIPR; Ethylene-responsive transcription factor erf098-like protein | ||||
STRING | XP_004495105.1 | 4e-61 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 2e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA25558 |
Publications ? help Back to Top | |||
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