PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25460
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 409aa    MW: 46990.9 Da    PI: 8.4701
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25460genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.82.6e-103323992190
                                HH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                         B3  21 kfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                +f+++h +++  ++  + l+     +W v ++++++ +  ++tkGW eFv++ ++k gD++vF+ ++ ++ 
  Tp57577_TGAC_v2_mRNA25460 332 EFLKKHnNIS--SGNSVELKV-GEGTWFVDVSFNQHFDYGWFTKGWPEFVRECKVKIGDTCVFEIIDLQNH 399
                                3444443333..344566555.4579**********999*************************7753443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509668.852148184IPR007527Zinc finger, SWIM-type
SMARTSM005755.0E-4159186IPR006564Zinc finger, PMZ-type
CDDcd100172.37E-11324406No hitNo description
Gene3DG3DSA:2.40.330.108.4E-12331406IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-10331406IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-7332399IPR003340B3 DNA binding domain
PROSITE profilePS508639.079354408IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MIKENGVEGH PWVIKTYENK LLWATAYLRD KFFGRIRTTS QCEAINAIIK SYVRKKGCIF  60
EFMQNFEQAL RGYRNNELVE DFKSKFSEPV LTTQLRLIES NAAKIYTAEI FKEVKEEIMK  120
AGELIVKHKK EIGDTKFYTL TKYCRDVYER TVVYDGDTFQ CLCRLFDSRG LPCSHIFHVM  180
KEEHVDHIPS TLVLSRWTKD AKIDYLNMVD VNDPVDSDVI ELARFGAYCS VLTSFCKEAS  240
KKNVVGDPIP VQSKGAPKKK KNDTKALRHC THCKSTTHNA RTCSEKKRKK SCNAESSVQD  300
INSELPVDLC ESSVQQKKKK CSELPKDRCE SEFLKKHNNI SSGNSVELKV GEGTWFVDVS  360
FNQHFDYGWF TKGWPEFVRE CKVKIGDTCV FEIIDLQNHV FKVSIILS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285289KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25460
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029126074.11e-104protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2Z6PKL11e-123A0A2Z6PKL1_TRISU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF845424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-23FAR1-related sequence 5