PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25305
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 533aa    MW: 59559.9 Da    PI: 9.4224
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25305genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039468490123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++Cp+C+k F++   L  H r+H
  Tp57577_TGAC_v2_mRNA25305 468 HECPICNKIFRSGQALGGHKRSH 490
                                79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-4228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.12E-5230No hitNo description
PROSITE profilePS501579.307633IPR007087Zinc finger, C2H2
SMARTSM003550.67628IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-5629IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
PROSITE profilePS501579.473120147IPR007087Zinc finger, C2H2
SMARTSM003550.21120142IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.85E-8121142No hitNo description
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
PfamPF139125.6E-7122144IPR007087Zinc finger, C2H2
SuperFamilySSF576675.85E-8463490No hitNo description
PROSITE profilePS501579.702468490IPR007087Zinc finger, C2H2
SMARTSM003550.018468490IPR015880Zinc finger, C2H2-like
PfamPF139125.2E-11468490IPR007087Zinc finger, C2H2
PROSITE patternPS000280470490IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MEEKKFVCKY CSKRYPCGKS LGGHIRTHMM SENSLQAKEE KRINANANVN AMFKFDDGRK  60
RKRLDLXXXX XXXXXXXXXX XXXXXXXXXD DGNLIYGLRE NPKKTSRFVH SNVATIQMEK  120
FCKECGKGFP SLKALCGHMA CHSEKDKGTN RIESVSGVTE KHKLVMDSQS DTEASVPTDT  180
RRSKRMKFKN LNGGDNSHPP SSSSLHWGNC SSSVSEVEQE QEDVARCLMM LSRDATYKGT  240
RFAMVTESSD NNSVVLEAKS KSPSVDTKFA AMKNIVGGTK NNGFEFAEKK LNKDAKMKSV  300
EIGYVSDNSD SGYFTYGPRK VESDDSSDAF FMNNDVKSSK AVLISGFEDH DFDSRKKIMS  360
SEKRNRNNNE FKKLALDDSR KRQNFVESSS KKKAKNGTYN NDENYESLKI ERESFSEDSA  420
YESDENSTDS DSYPAPPKTQ SNRNINAKTK KLTSKGKKKM KSKKSKEHEC PICNKIFRSG  480
QALGGHKRSH FVGGNIDENT FVIRPANGGA VQAAPAANPC LIDLNLPAPD DE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25305
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614031.10.0dentin sialophosphoprotein
TrEMBLA0A2K3P3C90.0A0A2K3P3C9_TRIPR; PEThy ZPT4-2
STRINGAES969890.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-78C2H2-like zinc finger protein