![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA25218 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 255aa MW: 29199.6 Da PI: 8.5942 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.3 | 2.9e-18 | 166 | 253 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k +++s+v+ +l lp +f++eh k + ++tl de+g++ + ++ k+ + l++GW++F+ a++L +gD+++F+l Tp57577_TGAC_v2_mRNA25218 166 FIKSMLQSHVTGGFWLGLPVHFCKEHLPK--HDEEMTLIDEDGEESRTTY--LAKKTG--LSGGWRGFAIAHNLVDGDTLIFEL 243 89************************433..3458***************..555444..9*********************** PP -SSSEE..EEEE CS B3 85 dgrsefelvvkv 96 ++r+ f +v++ Tp57577_TGAC_v2_mRNA25218 244 VKRTAF--KVMI 253 *99999..6655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.7E-22 | 158 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.45E-24 | 159 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.17E-24 | 164 | 254 | No hit | No description |
SMART | SM01019 | 1.8E-20 | 166 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-15 | 166 | 253 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.28 | 166 | 254 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MVAAAAAAAS YEESRRKRME ENKKRMEALN LHQLSQSFHK SSSPSVSKPS PSKPRTRTIH 60 KELVVVRRSS RVANLPTPIY KEVKFLLIYL EIEFQGIFLF SNFTHTDIIL LWIELTFFFC 120 VCVCRGGYNK YRDYSKRVYA SDEAREEALE KAEKLQSDLD SDHPIFIKSM LQSHVTGGFW 180 LGLPVHFCKE HLPKHDEEMT LIDEDGEESR TTYLAKKTGL SGGWRGFAIA HNLVDGDTLI 240 FELVKRTAFK VMIF* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA25218 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004501577.1 | 1e-112 | B3 domain-containing protein At5g42700-like | ||||
TrEMBL | A0A2Z6NES7 | 1e-111 | A0A2Z6NES7_TRISU; Uncharacterized protein | ||||
STRING | XP_004501577.1 | 1e-111 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-51 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA25218 |