PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25111
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SBP
Protein Properties Length: 348aa    MW: 38644.7 Da    PI: 8.8717
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25111genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP47.83.8e-151271574878
                                SEEETTT--SS--S-STTTT-------S--- CS
                        SBP  48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                 fh+l efD++krsCrrrLa+hnerrrk+q+
  Tp57577_TGAC_v2_mRNA25111 127 MFHQLAEFDQGKRSCRRRLAGHNERRRKPQP 157
                                5***************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-46386IPR004333Transcription factor, SBP-box
PROSITE profilePS5114117.95666155IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-12127160IPR004333Transcription factor, SBP-box
PfamPF031101.8E-8127154IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSSCFVPFSS SPSPPNSSTN ETLLDGLKFG KKIYFEDATS SVVVATQSNY NNTKSSMVMK  60
KGTHFPPKCQ VEGCKVDLSG SKAYYCXXXX XXXXXXXXXX VACIQNLQLL LSLVWSRDFA  120
NSVAGQMFHQ LAEFDQGKRS CRRRLAGHNE RRRKPQPKSF LTSRFPKLSP YTLDNNGKGD  180
NFLMDASYPK FSPRTSEPIP GNQTTQITWQ QNNSTTPSDF FLQGTNFHGP TRHPPPMENY  240
NEVTDSSCAL SLLSNQTWYS RNTTTASVEM NNLLNFNGSI ITQSPQGAAN YQLANSSWFL  300
KGVDSRNCMS SEDVPDLGLG QNSQAIQAIH SDLRGVLDVS QGKRQYN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25111
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467649.11e-133squamosa promoter-binding-like protein 15
TrEMBLA0A072VJ941e-132A0A072VJ94_MEDTR; Squamosa promoter-binding-like protein
STRINGXP_004497906.11e-108(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-30squamosa promoter binding protein-like 9