PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA25041

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 278aa MW: 30696.5 Da PI: 10.0968

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA25041	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.3	1.4e-08	191	233	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ r RR+ri +++ L++++P +K++ a++L +Av+Y+k L Tp57577_TGAC_v2_mRNA25041 191 IAARHRRERISEKIRILQRMVPGG-----TKMDTASMLDEAVHYVKFL 233 56799***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.04	184	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-13	185	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.69E-11	186	238	No hit	No description
SuperFamily	SSF47459	9.29E-14	188	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-13	190	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-6	192	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MDSNQLKPSS SSSEDQIDMM LMMMMQLPEL SSSNGNNNIN QFPPSDQQLY GSTPSSTNTR 60 PLVDLIDNPP NQIPNWSSTS SFTTHLPSQS PNTNTNTNTI SFTNNNMFQQ LQQASPTLMF 120 SNSNNDVVGT NTNHYVGGAA SASPSEKRNS MAAMREMIFR IAAMQPIYID PESVKPPKRR 180 NVKISKDPQS IAARHRRERI SEKIRILQRM VPGGTKMDTA SMLDEAVHYV KFLKTQLKSL 240 QERASVANSN RTVAGSGIGF PVSLPKPYQG RNVDHYA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA25041

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU012043	1e-164	CU012043.5 M.truncatula DNA sequence from clone MTH2-63O12 on chromosome 3, complete sequence.
GenBank	CU179697	1e-164	CU179697.4 M.truncatula DNA sequence from clone MTH2-63I19 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003603053.1	1e-146	transcription factor HEC2
TrEMBL	A0A2K3NFF5	0.0	A0A2K3NFF5_TRIPR; Transcription factor HEC1-like protein
STRING	AES73304	1e-145	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF651	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50330.1	2e-48	bHLH family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA25041