PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25037
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 399aa    MW: 45194.1 Da    PI: 7.9611
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25037genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.72.8e-36261182103
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                                Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++
  Tp57577_TGAC_v2_mRNA25037  26 FLTKTYQLVDDPSTDHIVSWGEDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEY 100
                                9*****************************************************************99.........******* PP

                                XXXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  86 Fkkgkkellekikrkkse 103
                                Fkkg+k+ll++i+r+k++
  Tp57577_TGAC_v2_mRNA25037 101 FKKGEKHLLCEIHRRKTT 118
                                ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-3818110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.1E-6122115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3423115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.0E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MALLLDNNCE GILLSLDSHK SVPAPFLTKT YQLVDDPSTD HIVSWGEDDS TFVVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV PDRWEFANEY FKKGEKHLLC EIHRRKTTQP  120
QQQTGINMNH LHHHQHQHQN VPPSFFPFSN STRVSISPPN DHYSDEQLLN NWSCDSPPLT  180
SPSFINGGTT TTTVTNNYNT SVTALSEDNE RLRRSNNMLM SELAHMKKLY NDIIYFVQNH  240
VKPVTPSNTY SSSFLLPQAS SNPMNGGNVS MVQRPMNNQN QLLGYYCNNN NNNNSPKNVT  300
QFQASQNQSH NHGVMNVNSP TNTSRSSITM VEGHNSNNNS SSKTKLFGVS LQSNKKRVHP  360
ECGSNNPNNL ETNKARLVLD QKDHDFDLGL NLMPPSTC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-222211817123Heat shock factor protein 1
5d5u_B1e-212211726131Heat shock factor protein 1
5d5v_B1e-212211726131Heat shock factor protein 1
5d5v_D1e-212211726131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25037
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1796971e-149CU179697.4 M.truncatula DNA sequence from clone MTH2-63I19 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603058.10.0heat stress transcription factor B-4 isoform X1
SwissprotQ9C6351e-118HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2K3N8B30.0A0A2K3N8B3_TRIPR; Heat stress transcription factor b-4-like protein
STRINGAES733090.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-111heat shock transcription factor B4