PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA24978

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NF-YB

Protein Properties

Length: 185aa MW: 19803 Da PI: 6.5204

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA24978	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	183.3	2e-57	25	120	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplk Tp57577_TGAC_v2_mRNA24978 25 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKG 108 89******************************************************************************** PP NF-YB 86 ylkkyrelegek 97 yl+++re+egek Tp57577_TGAC_v2_mRNA24978 109 YLQRFREMEGEK 120 ********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.3E-55	19	132	IPR009072	Histone-fold
SuperFamily	SSF47113	1.76E-40	27	130	IPR009072	Histone-fold
Pfam	PF00808	4.9E-28	30	94	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.3E-20	58	76	No hit	No description
PROSITE pattern	PS00685	0	61	77	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.3E-20	77	95	No hit	No description
PRINTS	PR00615	3.3E-20	96	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MADSDNDSGG PHGGSNAHGS EMSPREQDRF LPIANVSRIM KKALPANAKI SKDAKETVQE 60 CVSEFISFIT GEASDKCQRE KRKTINGDDL LWAMTTLGFE EYVEPLKGYL QRFREMEGEK 120 TVVARDKDAP QGSNSVNNSS FESGSYGGGI MMHQGHVYGS GGFQVIGKGG PGYPGPGSNP 180 GRPR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-49	19	115	1	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA24978

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ918285	1e-160	JQ918285.1 Medicago truncatula nuclear transcription factor Y subunit B12 (NF-YB12) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017435120.1	1e-110	PREDICTED: nuclear transcription factor Y subunit B-3-like
Swissprot	O23310	4e-74	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A2K3LFT0	1e-134	A0A2K3LFT0_TRIPR; Nuclear transcription factor Y subunit B-3-like protein
TrEMBL	A0A392NJG7	1e-134	A0A392NJG7_9FABA; Nuclear transcription factor Y subunit B-2-like
STRING	GLYMA18G08620.1	1e-107	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	1e-76	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA24978

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]