PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24973
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GATA
Protein Properties Length: 238aa    MW: 26257.5 Da    PI: 6.5156
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24973genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA32.51.2e-103266135
                       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                               C++C   +   +Rrgpdg k LCnaCGl++ ++g+
  Tp57577_TGAC_v2_mRNA24973 32 CQHCLFNENNVMRRGPDGRKNLCNACGLFWTRTGK 66
                               99999999999*******************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.7E-52677IPR000679Zinc finger, GATA-type
CDDcd002021.09E-83177No hitNo description
SuperFamilySSF577163.09E-83174No hitNo description
Gene3DG3DSA:3.30.50.104.2E-103171IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.0E-83266IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.3023274IPR000679Zinc finger, GATA-type
PfamPF056272.1E-15134169IPR008700RIN4, pathogenic type III effector avirulence factor Avr cleavage site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MKRKGRNNIL LREKNGQFKF LKQSCDPYLC ICQHCLFNEN NVMRRGPDGR KNLCNACGLF  60
WTRTGKLKDL SLSKGRGNLS IDQSDLDPLI DVNVTVLEGE FPVIQNEQGI SEDPSKAIAA  120
EGSNNHALYT RDEDKGRLLP KFSERDVKDP SSAEGFTVIF NEARDEKKTG SNPESPGKTA  180
TEPHNKPPLD PGKPQSPMKS FTFSETSVTI ESLLSFLDKD IPSTSEVDHT SVVGVSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24973
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1480613e-45BT148061.1 Medicago truncatula clone JCVI-FLMt-5D11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024635990.16e-38uncharacterized protein LOC11445335 isoform X2
TrEMBLA0A2K3MP931e-155A0A2K3MP93_TRIPR; GATA transcription factor 24-like protein (Fragment)
STRINGXP_004501662.18e-36(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-11ZIM-like 1