PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24880
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 308aa    MW: 35243.2 Da    PI: 7.8087
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24880genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21.1e-092973345
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                               +WT+eE +l+ +a + + ++   +W+++a++++ g+t  ++   + 
  Tp57577_TGAC_v2_mRNA24880 29 KWTPEENKLFENALAVHDKDtpdRWHRVAEMIP-GKTVGDVMKQYK 73
                               8********************************.***999987775 PP
2Myb_DNA-binding44.73.2e-14134178347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Tp57577_TGAC_v2_mRNA24880 134 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 178
                                8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-42073IPR009057Homeodomain-like
PROSITE profilePS512938.9882578IPR017884SANT domain
SMARTSM007171.8E-102678IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-122883IPR009057Homeodomain-like
PfamPF002492.6E-82873IPR001005SANT/Myb domain
CDDcd001675.48E-82975No hitNo description
PROSITE profilePS5129421.348127183IPR017930Myb domain
SuperFamilySSF466899.72E-17129182IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-17130182IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.5E-12131178IPR009057Homeodomain-like
SMARTSM007175.3E-13131181IPR001005SANT/Myb domain
CDDcd001671.25E-10134179No hitNo description
PfamPF002491.1E-12134178IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MKWEMEILPS ASSFTPNTNW CIEDNNTTKW TPEENKLFEN ALAVHDKDTP DRWHRVAEMI  60
PGKTVGDVMK QYKELEDDVC NIEAGLIPVP GYNTPTSPFT LDWVNSSSYD GFKGSGKRSP  120
ITRATEHERK KGVPWTEEEH KLFLLGLKKY GKGDWRNISR NFVITRTPTQ VASHAQKYFI  180
RQLSGGKDKR RASIHDITTV NLSETTRTCS SEDTNNRSTS PQNSMLLSHH QQQPSSTTTN  240
FHWRNNQQNA MAFNPAHEQV FMAPHGVNSY EIKMQDQNFQ KGLVNETSYP HNMVFQMQHS  300
SQHYSHA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-1530941175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24880
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0337661e-178CT033766.2 Medicago truncatula chromosome 5 clone mth4-42c9, COMPLETE SEQUENCE.
GenBankCT5735101e-178CT573510.2 Medicago truncatula chromosome 5 clone mth4-41f7, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615578.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-114DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2K3N0Q10.0A0A2K3N0Q1_TRIPR; Transcription factor DIVARICATA-like protein
STRINGAES985360.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-88MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]