PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2483
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 617aa    MW: 65120.7 Da    PI: 10.2459
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2483genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05126148123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               + C+ C+k F r  nL+ H r H
  Tp57577_TGAC_v2_mRNA2483 126 FICEVCNKGFQREQNLQLHRRGH 148
                               89*******************88 PP
2zf-C2H211.80.00075202224123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC +C+k +  +s+ k H +t+
  Tp57577_TGAC_v2_mRNA2483 202 WKCDKCSKKYAVQSDWKAHSKTC 224
                               58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.9E-6125148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.41E-7125148No hitNo description
PROSITE profilePS5015710.99126148IPR007087Zinc finger, C2H2
SMARTSM003550.0052126148IPR015880Zinc finger, C2H2-like
PfamPF121713.0E-5126148IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
SMARTSM00355160167197IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-4190223IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.41E-7197222No hitNo description
SMARTSM00355150202222IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MAASSSSTSL FGFRVEDPNP MKQQHSLPPS SFATPAAAAP SQKKKRNQPR KPNMAASSSS  60
ASLFGFRDED PNPMKQQHSL PPSSSAAPAV AAAPSQKKKR NQPGTPNPDA EVIALSPKTL  120
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKTTK EPKRKVYLCP EPTCVHHDPS  180
RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  240
DSFITHRAFC DALAQEGPRQ PPITLPGAIG SHLYGTTSNT MALNLSHVSP QMHHQQDHHS  300
NSATDILRLG ASANRTGQFD HHNILQPTFR PNNSFFSNNN IHDPNQNYVP DQGLMMQQNN  360
NSNNNNLFNI PNFLSSNNNS ATTNTNSGNN SFSEHLNVNN NEGTNFFTGS GGTTSAPSSL  420
FSNFPQGGAN SNINAAAATS IASMSATALL QKAAQMGATS SNGNGTTATS LLKSFGNNTG  480
SNSASSGGGA EHNRQLMSGG GGSGNYGFGG GNEQSNLHDL MNSFAATGNS SIFETGGGGV  540
GLGSGGGDSR QMTRDFLGVG QIVRSMSGAV GGQREHAAAF NLPGSLEGDQ RNINAAAAFG  600
RGGGGGGGGG AGGNFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34198264369Zinc finger protein JACKDAW
5b3h_F4e-34198264369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2483
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1604541e-148AC160454.31 Glycine max cultivar Williams 82 clone gmw1-15k6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470290.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_024627898.10.0protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-133IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A072VSD20.0A0A072VSD2_MEDTR; C2H2 zinc finger protein, putative
STRINGXP_004497164.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-101indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]