PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24826
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 213aa    MW: 24977.9 Da    PI: 9.4023
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24826genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.5e-172670147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               rg  T++E+ +++d+++++G++ W+tIar ++ gRt++++k++w+++
  Tp57577_TGAC_v2_mRNA24826 26 RGQITPQEESIILDLHARWGNR-WSTIARNLP-GRTDNEIKNYWRTH 70
                               7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.426120IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-10632IPR009057Homeodomain-like
SuperFamilySSF466892.35E-21677IPR009057Homeodomain-like
PROSITE profilePS5129425.0482175IPR017930Myb domain
SMARTSM007174.1E-152573IPR001005SANT/Myb domain
PfamPF002491.4E-142670IPR001005SANT/Myb domain
CDDcd001673.19E-113071No hitNo description
Gene3DG3DSA:1.10.10.607.8E-203371IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
LLTGLRRNGK SCRLRWVNYL RPDLKRGQIT PQEESIILDL HARWGNRWST IARNLPGRTD  60
NEIKNYWRTH FKKKAKNPSD AAEKAKNRFL RKQLFHQQQQ QLQQVQQQQQ QQLQFNLDMK  120
DVVSLFEENN INNHRVPYIS QTRQEMFNMC PNTTEEQSYF MFNGNSSVQD SSADDVLWDD  180
GLWNLDDVHG NFSVANATNK TGLYNLVTPN YC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-1777540108B-MYB
1gv2_A6e-1777537105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-1677591159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-1677591159MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-1677560128MYB TRANSFORMING PROTEIN
1mse_C6e-1777537105C-Myb DNA-Binding Domain
1msf_C6e-1777537105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24826
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497798.11e-118transcription factor MYB24-like
TrEMBLA0A2K3NFQ61e-146A0A2K3NFQ6_TRIPR; Transcription factor MYB 21-like protein (Fragment)
STRINGXP_004497798.11e-117(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-55myb domain protein 79