PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24808
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 308aa    MW: 34533.5 Da    PI: 7.7946
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24808genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-05103123323
                                ETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                C++C+k Fs++ +L  H++ H
  Tp57577_TGAC_v2_mRNA24808 103 CHYCDKKFSTSQSLGGHQNAH 123
                                ******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.5E-599127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.35E-699128No hitNo description
PROSITE profilePS5015711.863101128IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSEKNSIEND DKKNLKRKME DLEPKHEKPK VIPQTSESDV KDLLTPRLGI HTKSTIKSLE  60
IGEHSSSYKN AAESLSQNDT DELLPQNVTS EPLPEQQVRE FLCHYCDKKF STSQSLGGHQ  120
NAHKRERASK KMEEQRRKVE EMNQTLGFSY SNQLYPYQYP NPIPYQGYSY LHSANLNYPI  180
RSHINNIMPS WAIGSPSNGY GGLQIPNSSL TIPQFGMTNF RGGGQHVALP IPQRSNTMGL  240
RLFAQANQTP SIAESTERNF NAQFRSQTLP LLSHTDPIGG DQIQINHNIS SPPTQSTSEA  300
LNLNLTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11118KKNLKRKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24808
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626741.17e-85zinc finger protein 1-like
TrEMBLA0A2K3N3B00.0A0A2K3N3B0_TRIPR; Zinc finger protein
STRINGAES795703e-84(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1671128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.13e-11C2H2 family protein