PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA24733 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 122aa MW: 13855.2 Da PI: 11.0448 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.4 | 2.6e-16 | 67 | 108 | 1 | 46 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46 s y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a+ Tp57577_TGAC_v2_mRNA24733 67 SVYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAH 108 78*****998.**********843...6****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.10E-22 | 67 | 108 | No hit | No description |
SuperFamily | SSF54171 | 2.68E-16 | 67 | 111 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-10 | 67 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.029 | 68 | 108 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.4E-15 | 68 | 114 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-23 | 68 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-11 | 69 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-11 | 91 | 107 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MILILLLLSP FSTHLIVYTL IICYLKKKKN TMVNNNTSSL SSPSSPPQSL TCSSEEEKRG 60 KKRDNKSVYR GVRMRTWGKW VSEIREPRKK SRIWLGTFAT AEMAARAHXX XXTTITITTT 120 F* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA24733 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007161494.1 | 3e-25 | hypothetical protein PHAVU_001G073800g | ||||
Swissprot | Q9LYD3 | 6e-24 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
Swissprot | Q9M080 | 5e-24 | ERF43_ARATH; Ethylene-responsive transcription factor ERF043 | ||||
TrEMBL | A0A2K3NIP6 | 3e-32 | A0A2K3NIP6_TRIPR; Dehydration-responsive element-binding protein 3-like | ||||
STRING | XP_007161494.1 | 1e-24 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 5e-19 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA24733 |
Publications ? help Back to Top | |||
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