PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24507
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 327aa    MW: 36045.1 Da    PI: 7.1489
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24507genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.54.4e-16256298547
                                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                                +r++r++kNRe+A rsR+RK+a+++eLe kv  Le+eN++Lk 
  Tp57577_TGAC_v2_mRNA24507 256 RRQKRMIKNRESAARSRARKQAYTQELEIKVSHLEEENERLKR 298
                                79***************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.3E-15249299No hitNo description
SMARTSM003382.0E-14252320IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.496254299IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-12256302No hitNo description
CDDcd147073.41E-24256301No hitNo description
PfamPF001703.7E-13256299IPR004827Basic-leucine zipper domain
PROSITE patternPS000360259274IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGSHGGATIQ EAKTGTLAKE GSLYNLTLDE VQNQLGNLGK PLGSMNLDEL LKSLWTSEAA  60
QASGLDSSAT DGYMQNGQLA SGSSMNPLNL SGDLSKKTID EVWRDMQQKK SSSQDRRTAT  120
ATLGEMTLED FLMKAGVATE TFPSEDNAMS GRVDSQSQEQ HNASQAQHGH WMQYQIPSAQ  180
QQQQQHQHQN NQNNMMTGFA GYMAGHVVQH PVLDAGYTEA MLSLSPSSLM ANSSDTQTQG  240
RKRVASGVVV EKTVERRQKR MIKNRESAAR SRARKQAYTQ ELEIKVSHLE EENERLKRQH  300
EIERVLPSMP PPDPKHQLRR TSSAPL*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00409DAPTransfer from AT3G56850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24507
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1491340.0AC149134.2 Medicago truncatula clone mth2-19l15, complete sequence.
GenBankAC2035500.0AC203550.5 Medicago truncatula clone mth2-145m13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624832.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 2
SwissprotQ9LES31e-99AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A2K3PDL00.0A0A2K3PDL0_TRIPR; Abscisic acid-insensitive 5-like protein
STRINGAES810500.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.18e-96ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  2. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]