PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA24432

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

GRAS

Protein Properties

Length: 658aa MW: 73906.2 Da PI: 6.3125

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA24432	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	370.8	1.8e-113	289	654	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 +lL++cA+av s d+++a+ +L+++++++s +gd +qRla+yf+ +L+arl+ ++ +yk+l++s++ ++ l+a+k++ Tp57577_TGAC_v2_mRNA24432 289 TLLTQCAQAVGSYDQRNANDILKQIRQHSSAHGDGLQRLAHYFADGLEARLSA-GTPMYKQLQSSSS-----ADMLKAYKVYIT 366 69************************************************9.8889987776666.....59****** PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168 +sP+ ++s+++aN++Il +++++ +HiiDf++ +G+QWp+L+q L++ p+gpp+lRiTg++ p++g +e++eetg+rL+k+ Tp57577_TGAC_v2_mRNA24432 367 ASPFQRMSNFLANRTILGLAQNKSSLHIIDFGVFYGFQWPCLIQRLSEMPQGPPRLRITGIDLPQPGfrPAERVEETGRRLEKY 450 **************************************************************9************* PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252 ++++gvpfe+n +a+++++++le+L+++++E+++Vn+ ++l++l de+v+ + +rd+vL+l+++++P+++++ + +n++ Tp57577_TGAC_v2_mRNA24432 451 CKRFGVPFEYNC-LAQKWDTIRLEDLKIDREEVTVVNCLYRLKNLSDETVTANCPRDAVLRLIRKINPNIFIHGVVNGTYNAPF 533 ********.6****************************************************************** PP GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336 Fl+rf eal ++s+lfd+lea++pre+ r + E+ l+gr++vnv+acegaer+er et+++W+ r ++a Fk++pl + ++ Tp57577_TGAC_v2_mRNA24432 534 FLTRFREALFHFSSLFDMLEATVPREDPYRLMFEKGLFGRDAVNVIACEGAERVERPETYKQWQVRNKRARFKQLPLAPELVDR 617 ******************************************************************************** PP GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +k +++k + + + v+e+ +++++gWk+r L +vS+W Tp57577_TGAC_v2_mRNA24432 618 VKEMVKKEYPKDFVVDEDGKWVLQGWKGRILHAVSCW 654 ****9777*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.289	261	635	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.2E-111	289	654	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence Send to blast
MLSTDTLVEN FPGSVNGCMF GNIPVSVFSN QNPENGFKFE DSNSISISPS THSDSPNDSG 60 TTSNVESSES SKYSNPILRF ISDILMDEED YLEKKPCMLQ DCLKLQAAEK SFYDVLGNNN 120 NNNFGAGTVT STSSESYSNS SYTTDNSVVD YDSPENNAYE VFDKMPQAVF NFPSDAWNMN 180 QEGTLILGSR GGSREKRGLL MNDVGILHEE DLRSSKVSAV YSDDSELSEM FDEVLLCKDG 240 KSPSIFGANS EPSSHSHVSS SLGSNGKTSR SKKGSNKVKK LSSTVDLWTL LTQCAQAVGS 300 YDQRNANDIL KQIRQHSSAH GDGLQRLAHY FADGLEARLS AGTPMYKQLQ SSSSADMLKA 360 YKVYITASPF QRMSNFLANR TILGLAQNKS SLHIIDFGVF YGFQWPCLIQ RLSEMPQGPP 420 RLRITGIDLP QPGFRPAERV EETGRRLEKY CKRFGVPFEY NCLAQKWDTI RLEDLKIDRE 480 EVTVVNCLYR LKNLSDETVT ANCPRDAVLR LIRKINPNIF IHGVVNGTYN APFFLTRFRE 540 ALFHFSSLFD MLEATVPRED PYRLMFEKGL FGRDAVNVIA CEGAERVERP ETYKQWQVRN 600 KRARFKQLPL APELVDRVKE MVKKEYPKDF VVDEDGKWVL QGWKGRILHA VSCWVPA*

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence Send to blast

MLSTDTLVEN FPGSVNGCMF GNIPVSVFSN QNPENGFKFE DSNSISISPS THSDSPNDSG  60
TTSNVESSES SKYSNPILRF ISDILMDEED YLEKKPCMLQ DCLKLQAAEK SFYDVLGNNN  120
NNNFGAGTVT STSSESYSNS SYTTDNSVVD YDSPENNAYE VFDKMPQAVF NFPSDAWNMN  180
QEGTLILGSR GGSREKRGLL MNDVGILHEE DLRSSKVSAV YSDDSELSEM FDEVLLCKDG  240
KSPSIFGANS EPSSHSHVSS SLGSNGKTSR SKKGSNKVKK LSSTVDLWTL LTQCAQAVGS  300
YDQRNANDIL KQIRQHSSAH GDGLQRLAHY FADGLEARLS AGTPMYKQLQ SSSSADMLKA  360
YKVYITASPF QRMSNFLANR TILGLAQNKS SLHIIDFGVF YGFQWPCLIQ RLSEMPQGPP  420
RLRITGIDLP QPGFRPAERV EETGRRLEKY CKRFGVPFEY NCLAQKWDTI RLEDLKIDRE  480
EVTVVNCLYR LKNLSDETVT ANCPRDAVLR LIRKINPNIF IHGVVNGTYN APFFLTRFRE  540
ALFHFSSLFD MLEATVPRED PYRLMFEKGL FGRDAVNVIA CEGAERVERP ETYKQWQVRN  600
KRARFKQLPL APELVDRVKE MVKKEYPKDF VVDEDGKWVL QGWKGRILHA VSCWVPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	9e-47	293	656	24	379	Protein SCARECROW
5b3h_D	9e-47	293	656	24	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA24432

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC174290	0.0	AC174290.6 Medicago truncatula clone mth2-52e11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004507177.1	0.0	scarecrow-like protein 30
TrEMBL	A0A2K3MTJ4	0.0	A0A2K3MTJ4_TRIPR; SCARECROW-like protein 14-like
STRING	XP_004507177.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-177	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA24432