PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24132
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 314aa    MW: 35695.9 Da    PI: 6.7517
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24132genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.41.2e-3254155199
                                EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                f+k ltpsdv+k++rlv+pk++ae++   ++++ ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+
  Tp57577_TGAC_v2_mRNA24132  54 FEKPLTPSDVGKLNRLVIPKQHAERYfplDSEEVKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVL 137
                                99***************************88888999*********************************************** PP

                                EEE-SSSEE..EEEEE-S CS
                         B3  82 Fkldgrsefelvvkvfrk 99 
                                F++++++  +++++++r+
  Tp57577_TGAC_v2_mRNA24132 138 FQRHRTQPSRFFISWRRR 155
                                **8887888889999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-4047159IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-3150156IPR015300DNA-binding pseudobarrel domain
CDDcd100176.81E-2953154No hitNo description
PROSITE profilePS5086314.76254156IPR003340B3 DNA binding domain
SMARTSM010197.3E-2354156IPR003340B3 DNA binding domain
PfamPF023622.1E-2954155IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSLPETASLW WNSSQQQQQK TQQEEEGEIE DDVVSDTITK MKSTPEEEEK ESMFEKPLTP  60
SDVGKLNRLV IPKQHAERYF PLDSEEVKGL LLSFEDESGK CWRFRYSYWN SSQSYVLTKG  120
WSRYVKDKRL DAGDVVLFQR HRTQPSRFFI SWRRRHGSNS TPPAYVSNSI DGNGVVSVGW  180
ARGLYPAPNA YPTHHHHPLS NYHAGGGTES QNTSTGCGNN SSSSTSRVLR LFGVNMECQP  240
DNDNININDD SQTNFTPDNN QCSYNNNNNN NNNNISSSTT TTTQGTAIPQ FYHHLHRQPP  300
SNPHHHMLRQ QPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-51491553113B3 domain-containing transcription factor NGA1
5os9_B5e-51491553113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24132
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450138.11e-139B3 domain-containing protein At2g36080
SwissprotQ9FNI32e-66Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A2K3NQS11e-158A0A2K3NQS1_TRIPR; B3 DNA-binding domain protein
STRINGXP_004494224.11e-125(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.23e-59B3 family protein