PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24077
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 574aa    MW: 63321.8 Da    PI: 8.2091
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24077genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-1562108148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                +g WT+eEde l +av+ + g++Wk+Ia+ +   R++ qc +rwqk+l
  Tp57577_TGAC_v2_mRNA24077  62 KGGWTAEEDETLRNAVAAFKGKHWKKIAEFFK-DRSEVQCLHRWQKVL 108
                                688****************************9.************986 PP
2Myb_DNA-binding62.68e-20114160148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                +g+WT+eEd+++v++v ++G+  W++Ia+ ++ gR +kqc++rw+++l
  Tp57577_TGAC_v2_mRNA24077 114 KGPWTQEEDDKIVELVSKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 160
                                79******************************.*************97 PP
3Myb_DNA-binding54.62.5e-17166209146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Tp57577_TGAC_v2_mRNA24077 166 KDAWTLEEELALMNAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 209
                                679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.30357108IPR017930Myb domain
SMARTSM007172.0E-1361110IPR001005SANT/Myb domain
PfamPF002491.4E-1362108IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-1463118IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-1964114IPR009057Homeodomain-like
CDDcd001676.33E-1265108No hitNo description
PROSITE profilePS5129433.151109164IPR017930Myb domain
SuperFamilySSF466896.74E-32111207IPR009057Homeodomain-like
SMARTSM007171.9E-18113162IPR001005SANT/Myb domain
PfamPF002496.9E-19114160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-28115163IPR009057Homeodomain-like
CDDcd001672.93E-16116160No hitNo description
Gene3DG3DSA:1.10.10.602.6E-23164215IPR009057Homeodomain-like
SMARTSM007172.6E-16165213IPR001005SANT/Myb domain
PROSITE profilePS5129422.62165215IPR017930Myb domain
PfamPF002491.9E-15166209IPR001005SANT/Myb domain
CDDcd001671.58E-12168211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MEVYSEEMCC LENKQSTVAS CSSSEDSGCG SAIQKSPGIC SPTATSTSPS HRRTTGPIRR  60
AKGGWTAEED ETLRNAVAAF KGKHWKKIAE FFKDRSEVQC LHRWQKVLNP ELVKGPWTQE  120
EDDKIVELVS KYGPTKWSLI AKSLPGRIGK QCRERWHNHL NPDIKKDAWT LEEELALMNA  180
HRIHGNKWAE IAKVLPGRTD NAIKNHWNSS LKKKLDFYLA TGKLPPVPKS NPLVAAKDTI  240
KRSATKPILV SSNKELNVAV DTSSETTAIS KPDDSGKNQF ESSGTARDVG DSSSVPTNES  300
ADFDCVECEP GPSNVDLSCG NSEHISRVNF GTTYGPKSEN SALNGNPITE HCLNNGKMSN  360
SDSRLIGTSA QENHTFGSLY YEPPLLPGSV PLDSLHLSIL SMQNDYCSKM SPLGYITPPR  420
ARDSELCTET PESILRKAAN TYPNTPSIYR RRRTGDQPLT SPSKVLKVHN DSHASNEPDR  480
TKNNSDSEAR TLSDSPASLD NKSVNLNNKA FNASPPYRLR TKRTAVVKSV EKQLEFAFDK  540
EKNDDSMNAM EKSAKRSNAM TEDCLHERKL VVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-68612155159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-68612155159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24077
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0531440.0BT053144.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-A-18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003623113.10.0transcription factor MYB3R-3
RefseqXP_013448854.10.0transcription factor MYB3R-3
SwissprotQ6R0321e-156MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A2K3NSI10.0A0A2K3NSI1_TRIPR; MYB domain protein 3r-5
STRINGAES793310.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-152myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]