|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Tp57577_TGAC_v2_mRNA2403 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
Family |
NAC |
Protein Properties |
Length: 361aa MW: 41408.4 Da PI: 5.0679 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Tp57577_TGAC_v2_mRNA2403 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 177 | 5e-55 | 8 | 137 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgy 82
+ppGfrFhPtdeelv +yL+kk++++k++l +vi+e+d+y++ePwdL++ ++e++ewyfFs++dkky+tg+r+nrat +g+
Tp57577_TGAC_v2_mRNA2403 8 VPPGFRFHPTDEELVGYYLRKKIASQKIDL-DVIREIDLYRIEPWDLQErcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGF 91
69****************************.9***************953432233667************************** PP
NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
Wkatg+dk+v++ k +l+g++ktLvfykgrap+g+k+dW+mheyrle
Tp57577_TGAC_v2_mRNA2403 92 WKATGRDKAVYD-KMKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 137
************.999*****************************85 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010200 | Biological Process | response to chitin |
GO:0048759 | Biological Process | xylem vessel member cell differentiation |
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
GO:1990110 | Biological Process | callus formation |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 361 aa
Download sequence Send
to blast |
MESMESCVPP GFRFHPTDEE LVGYYLRKKI ASQKIDLDVI REIDLYRIEP WDLQERCRIG 60 YEEQNEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKA VYDKMKLIGM RKTLVFYKGR 120 APNGQKSDWI MHEYRLESDE NGPPQEEGWV VCRAFKKRTT NSQNTKRTIE GWDTTSYFYE 180 EAPCGIINNS MVDPIELISR QPQSYLSQTY NMCKQEIEAC MHAEQFVQLP QLESPSLPLL 240 VKRPSTVSLV SSEINNDDTD DQNRLLLLSN NNNTTTTTMN TNNVTDWRAL DKFVASQLSH 300 EVETDQGVLL SSFGATNNNH SSDMALMLLQ QSSRDEGNKL SPFLNGSSDC SDIGICIFEK 360 *
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT147274 | 0.0 | BT147274.1 Medicago truncatula clone JCVI-FLMt-4I24 unknown mRNA. |