PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23976
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 303aa    MW: 34206.8 Da    PI: 6.4406
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23976genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019113135123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                + C++C+k Fs++  L  H++ H
  Tp57577_TGAC_v2_mRNA23976 113 FCCHYCDKKFSTSQALGGHQNAH 135
                                78******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.47E-8106153No hitNo description
PROSITE profilePS5015710.388113140IPR007087Zinc finger, C2H2
PROSITE patternPS000280114137IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MFEKNFTENA EDKNLKRKME EEPEPKLEKE SKAMPPTFES NDEDVLPTRL DIHTKSTSKT  60
LEIGEHSSSS HKAIGESSSH NTTGETLSKN ATGKLLAQNA ADEPLPEQKV REFCCHYCDK  120
KFSTSQALGG HQNAHKHVRE FKKMEEQKRE EEMNSTLRFS SSNQSYLYQF SSPIHYQGYS  180
YLRNANLTHP TSAYTTMPSW PIGSSTRYGG LYMSNALPTY PRFVMQMPIS SPTTPQFRIT  240
RFWGGNQNVE SEERNFNPQH GSQTLQLLSR NLIGEDTIQA NSDVSSSSTQ STSEEVNLNL  300
TL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23976
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626741.14e-81zinc finger protein 1-like
TrEMBLA0A2K3LH030.0A0A2K3LH03_TRIPR; Zinc finger protein
STRINGAES795702e-80(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1671128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.14e-09C2H2 family protein