PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA23860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 165aa MW: 18968.5 Da PI: 10.3105 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.9e-05 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F+ L H+r+H Tp57577_TGAC_v2_mRNA23860 80 HECSICGQEFKLGQALGGHMRRH 102 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.77E-6 | 77 | 104 | No hit | No description |
Pfam | PF13912 | 1.9E-9 | 80 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.806 | 80 | 107 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MKLCFTNIKH SHVQAYNTHD EETETKRRKR EHRFSNKSNA TLFSSYPTKQ KNIIFSXXXX 60 XIDSEEAKKV NINNNKPKMH ECSICGQEFK LGQALGGHMR RHRINNEGSS INYQVITKSS 120 PVLKRSNSKR IIMCLELDLN LTPLENDLKL LFGNKAPRVD LSLF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA23860 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013468306.1 | 1e-58 | zinc finger protein ZAT11 | ||||
Swissprot | Q9SLD4 | 4e-20 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A072VLR4 | 3e-57 | A0A072VLR4_MEDTR; C2H2 type zinc finger transcription factor family protein | ||||
TrEMBL | A0A396JNK8 | 3e-57 | A0A396JNK8_MEDTR; Putative transcription factor C2H2 family | ||||
STRING | XP_004494993.1 | 6e-44 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 1e-22 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA23860 |