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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA23820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 301aa MW: 33364.6 Da PI: 4.7661 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.2 | 1.2e-14 | 30 | 69 | 2 | 45 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45 +y GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a Tp57577_TGAC_v2_mRNA23820 30 RYLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALA 69 588******.**********965...5**************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 17.24 | 30 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.28E-14 | 30 | 72 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.9E-20 | 30 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-19 | 30 | 69 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.19E-17 | 30 | 112 | No hit | No description |
PRINTS | PR00367 | 1.2E-8 | 31 | 42 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.4E-8 | 31 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MSPLKGKKKQ TTGTTSETTT QEQQTAWGGR YLGVRRRPWG RYAAEIRDPS TKERHWLGTF 60 DTAEEAALAX XXXXXXXXXX XXXXXXXXXX XXXXXXDRAA RGMRGSRART NFVYADTPPG 120 SSVTPILSPD QQQQQQPQTF HDLSFVLQPD PVPCLDPVSI ITSSVNYGYN EENINYLNKY 180 NHSPQVPLPT LEASINNGNS YFNLGSNSTT SSVELPPLPP DITSSTCYDQ GNYGFNGGDH 240 DHDHDNGYYY SSSWEQNMDC YNNNQMFGTN MGGAESNNTT TLAGSVNGST FDFGSSSFFF 300 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-14 | 26 | 112 | 1 | 62 | ATERF1 |
3gcc_A | 1e-14 | 26 | 112 | 1 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA23820 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013449469.1 | 5e-97 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | A0A2K3N886 | 1e-168 | A0A2K3N886_TRIPR; Ethylene-responsive transcription factor lep-like protein | ||||
STRING | XP_004493337.1 | 7e-86 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3904 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 2e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA23820 |