PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA23074

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 148aa MW: 16986.4 Da PI: 7.6668

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA23074	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.1	1.3e-08	25	65	49	90
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++ + t+aetrt+C ++ ++++ d+k++++++++ HnH l+ Tp57577_TGAC_v2_mRNA23074 25 DTDKVTNAETRTDCPTRIALSRK-DEKFVIHEFVEAHNHLLQ 65 566889**************9.9************885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.3E-6	25	64	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
LKRNEGTLEF TCLHGLLEGL IDVHDTDKVT NAETRTDCPT RIALSRKDEK FVIHEFVEAH 60 NHLLQLPKTT HMLASHRKIS EVQAYEIEMA EDSGLMQKAS FQLMSAHVGG RDNLGYTRQY 120 AKNYLKERRK CRMLFGEVGS LMEYFQK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA23074

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027362746.1	6e-49	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S2XKF4	9e-46	A0A1S2XKF4_CICAR; protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3Q7YFU8	2e-46	A0A3Q7YFU8_CICAR; protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A3Q7YH29	5e-47	A0A3Q7YH29_CICAR; LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 5
STRING	XP_004490690.1	2e-46	(Cicer arietinum)
STRING	XP_004506622.1	3e-47	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3045	14	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-11	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA23074