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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA22960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 385aa MW: 43554.1 Da PI: 7.9667 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 9.8e-20 | 239 | 289 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ykGVr+++ +g+WvAeIr p++ r+r++lg+f+tae+Aa a++ a+ l+ge Tp57577_TGAC_v2_mRNA22960 239 LYKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYILRGE 289 59******9.**********955...5************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.87E-31 | 238 | 298 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-31 | 239 | 297 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-34 | 239 | 302 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.379 | 239 | 296 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-22 | 239 | 297 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.7E-12 | 240 | 289 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 240 | 251 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 262 | 278 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MEDTFPKMEI FTQKELPTCL QEIVTTESKY LEDTIIRRDS YSLTSSSTLS PQNRFWCTSN 60 STSMKQEVVP LTTLVNQMPS NFNDHYDDMK RMKGINQSIS GFNYMSSPNV IASDIKHSFV 120 PLNLLETLPA LTLTPVSDEP TGSLASSSTT PKYPNLTLFL QEPSMLYKSS EIISTTSYPT 180 YPMSQFGLTQ HQQNSGYGFY DSNKMNKNMM ENLQSKSFNE NWLSTTKTQP MKYGARGKLY 240 KGVRQRHWGK WVAEIRLPRN RTRVWLGTFD TAEDAAIAYD TAAYILRGEC AQLNFPDLKH 300 VIQANSLNGT TASLVEAKLQ AISQQGVSSS HRKQRSNNKH IDEVKNGKEE TMKDLKVGGD 360 TDDRSKSMQN EICDVETVQL SRMPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 235 | 296 | 1 | 63 | ATERF1 |
3gcc_A | 1e-22 | 235 | 296 | 1 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA22960 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC166707 | 0.0 | AC166707.9 Medicago truncatula strain cultivar Jemalong A17 clone mte1-13o17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003591645.2 | 0.0 | ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | G7I2Z1 | 0.0 | G7I2Z1_MEDTR; AP2 domain class transcription factor | ||||
STRING | AES61896 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10102 | 31 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 5e-47 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA22960 |