PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA22546 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 765aa MW: 88246.3 Da PI: 7.3868 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.5 | 1.4e-20 | 67 | 165 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks......krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgk 75 +fY+ +A++ GFs+r+++ ++s ++ ++kr+fvC + g +++k ++++++r+r++++++C ak+ v k++ ++k Tp57577_TGAC_v2_mRNA22546 67 DFYSLFARKNGFSIRRDHVYRSciheseHNPMGVYKREFVCHRGGIVKQRKINEVESKRKRKSSKCNCMAKMLVAKRTidlEEK 150 6*********************998876555679******************************************999999** PP FAR1 76 wevtkleleHnHela 90 w++t +++ HnH+l Tp57577_TGAC_v2_mRNA22546 151 WVITYFNNYHNHDLL 165 ************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.0E-18 | 67 | 165 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.4E-27 | 287 | 380 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.965 | 552 | 600 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.4E-8 | 572 | 599 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.0E-6 | 575 | 602 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 765 aa Download sequence Send to blast |
MTSEENNDAS DWHLEALKDY TSIYADEHVS SLPFHEPQYE LFPQVHNIDE LVPFEGQIFN 60 SDDDAYDFYS LFARKNGFSI RRDHVYRSCI HESEHNPMGV YKREFVCHRG GIVKQRKINE 120 VESKRKRKSS KCNCMAKMLV AKRTIDLEEK WVITYFNNYH NHDLLDDKEV QFLPAYRNIP 180 IADQSRILLL SKAGCAISLI TRVLELEKGI DTGSLPFLDK DIRNFIQSQS SIGKENDASD 240 VLKLCKSLKD IDDDFKYEFT IDENNKLEHI IWAFGDSIRA YETFGDVVVF DTTYRINRYD 300 MPLGLWVGVD NHGNSIFFGC VLLRDEKIPS FTWALKNFLA FVQGKYPKTI LTDQDLALKE 360 AIAMELPNTK HAFCIWHIVS KLSSWFSFAL GSRYNDFKQE FHRVYHLGCG EDFEREWQVM 420 VAEFGLLLDR HIELLFSHRK FWALAYLKDF FFAGMTTTGR SESINAYIKR FLDAKTSLTD 480 FVNQVGVAVK IRNQAGEEAR MRQKYHNPHI RTCFPIEEHA ASVLTPYAFD LLQHEIELST 540 KYAATEIDNS SYIVKHHTKD DGGRLVSWIV EKESIHCSCK EFQFSGILCR HAIRVLTLKN 600 YFSLPSKYLP FRWRRESSLI PKSSHVVNCN GGSSAEFQSL IRCLEVESSK TKEREQIAIR 660 ELEKVVKEIK NMPESEEHVI DLQPDDANND GCDVENPVVT KSKGRPKGSR SRPKGGVEGA 720 KKPRYCHVPG CNQTDHDTRN CPNKKKNIKV LPSQSPNKII KGWK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA22546 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506527.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11-like | ||||
TrEMBL | A0A396JX52 | 0.0 | A0A396JX52_MEDTR; Putative transcription factor FAR family | ||||
STRING | AES98736 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF594 | 30 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA22546 |