PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22346
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 325aa    MW: 36632.1 Da    PI: 5.0902
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22346genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.34.2e-1330651348
                               HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                     SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklye 48
                               fs R+  ++ K  ELSvLC+a+ a+ii+s+++kly+
  Tp57577_TGAC_v2_mRNA22346 30 FSERKLSLFNKVTELSVLCNAKTALIIMSPDNKLYT 65
                               9**********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.4E-71369IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-131780IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.3721870IPR002100Transcription factor, MADS-box
PfamPF003196.4E-113065IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-53247IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-54768IPR002100Transcription factor, MADS-box
PROSITE profilePS508939.25791323IPR003439ABC transporter-like
Gene3DG3DSA:3.40.50.3002.2E-41176321IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF000058.2E-14186277IPR003439ABC transporter-like
SuperFamilySSF525408.33E-46186320IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE patternPS002110249263IPR017871ABC transporter, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
GO:0016887Molecular FunctionATPase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
LFPPSLPHKR SLMAPRKRKF DEINKSDKKF SERKLSLFNK VTELSVLCNA KTALIIMSPD  60
NKLYTCGYPN CDSVVKQFLT GKDMVEDGEK KKQEEIVETL RFEYEAIEEK LEEEDKNLKA  120
MIGGEKKENS DSIYPWWCDS IDDMNLESLE EFKASLQNLR LNLGSAMDEK KLTNLGSNLI  180
LLPYLQTSIV SQEPTLLNCS IEENIAYGFD AKINDADIEN AAKMANAHEF ISNFPEKYKT  240
FVGERGIRLS GGEKQRIAIA RALLMDPKIL LLDEATSALD AESEYLVQVQ DAMNSIMKQR  300
TVLVIAHRLS TVKTANTVAV VILH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zdq_A1e-47190321423554ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10, MITOCHONDRIAL
4ayt_A1e-47190321423554ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10 MITOCHONDRIAL
4ayx_A1e-47190321423554ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22346
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3KYH30.0A0A2K3KYH3_TRIPR; ABC transporter B family member 25-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132271027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-15AGAMOUS-like 62