PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22295
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 297aa    MW: 32960.7 Da    PI: 6.373
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22295genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-0595117123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++Cp+C+k +s+   L  H++tH
  Tp57577_TGAC_v2_mRNA22295  95 FPCPYCDKKYSTFQALGGHQNTH 117
                                89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.72E-694123No hitNo description
PROSITE profilePS5015710.88795122IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-495123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.6E-795119IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSERISIGND ENRKLKRGME EHSEPRPEKE SKVMSSTSEF NAEDLLNLSL DIHTESSIKS  60
LEIGEHSSSS QNVVVEPLSQ NVDVEPLYEQ KVTEFPCPYC DKKYSTFQAL GGHQNTHKRE  120
RAFIKMQKQR REEELISNLR FRSIHQPYPY PISSPNHYLG YSYLGSANLH HPISHHMNNT  180
MPSWASGSTY GGYGGLYMPN TPPTIPQLAM RMPSSSLATT QFGTTNFLGG GQNVAFPIPQ  240
RSDTSGLELF AQANQTPLIV EAHTSPIGEG LIQTNPNVSS SSTQSTAKEL NLDFTL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22295
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626741.15e-92zinc finger protein 1-like
TrEMBLA0A2K3MNW60.0A0A2K3MNW6_TRIPR; Zinc finger protein
STRINGAES795702e-91(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1671128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.11e-09C2H2 family protein