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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA22196 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 199aa MW: 22456.2 Da PI: 9.2758 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00033 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k Fs+ L H +H Tp57577_TGAC_v2_mRNA22196 71 YECKTCNKKFSSFQALGGHRASH 93 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 14.3 | 0.00012 | 118 | 140 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H Tp57577_TGAC_v2_mRNA22196 118 HECSICGQEFSLGQALGGHMRRH 140 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.762 | 71 | 98 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.061 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.5E-9 | 71 | 140 | No hit | No description |
Pfam | PF13912 | 6.2E-11 | 71 | 95 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.3E-4 | 116 | 140 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.847 | 118 | 140 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.079 | 118 | 140 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.7E-9 | 118 | 142 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 120 | 140 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
LYHPYHILIH KLLITNFTSN FANSTLVDMK RQRDIEGLES IDLANCLMML SYPQQQQNNK 60 PNQKSFGPME YECKTCNKKF SSFQALGGHR ASHKRSKFEG DELIKANALT LGNKPKMHEC 120 SICGQEFSLG QALGGHMRRH KAIINEEVVS SMEKVVKLPI LKRLNSARIM CLDLNLTPLE 180 NDLKLLFGKM APNLDVLV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA22196 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC125368 | 1e-167 | AC125368.7 Medicago truncatula clone mth2-13h15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024627195.1 | 1e-104 | zinc finger protein ZAT11-like | ||||
Swissprot | Q9SLD4 | 8e-44 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A396H512 | 1e-102 | A0A396H512_MEDTR; Putative transcription factor C2H2 family | ||||
STRING | AES81740 | 1e-103 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 2e-44 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA22196 |