PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2219
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 439aa    MW: 50022.6 Da    PI: 10.0455
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2219genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55.1e-18142230197
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               f+k +++s+v +  +l lp++f+ eh  ++ ++  +tlede+g +++ k+   +++++  l++GW+ F+ +++L++gD +vF+l+
  Tp57577_TGAC_v2_mRNA2219 142 FIKSMVRSHVYSCFWLGLPNRFCVEHL-PT-TGSNMTLEDEDGSEYDAKY--IGSRSG--LSGGWRAFALEHKLDDGDALVFELV 220
                               89************************4.33.4448***************..555555..9**********************98 PP

                               SSSEE..EEEEE CS
                        B3  86 grsefelvvkvf 97 
                               +  +f  ++ ++
  Tp57577_TGAC_v2_mRNA2219 221 EPARF--KIYIV 230
                               75555..66655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-20135231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-22135231IPR015300DNA-binding pseudobarrel domain
CDDcd100176.10E-26140231No hitNo description
PROSITE profilePS5086312.76142233IPR003340B3 DNA binding domain
PfamPF023622.2E-16142231IPR003340B3 DNA binding domain
SMARTSM010198.9E-22142233IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAKGCSSNSY EEVKKQRVEE NKKRFEELGI SKMSKNLTKV TSPAKKSQNR LPKLKLKTNE  60
VEPRRSSRPR NHVKSYTEEF STDLPDRSSY MRKRSRSSSS SWESYVARPL DEIKVATERE  120
RMRAYEAAEA LQIKLQSSKP SFIKSMVRSH VYSCFWLGLP NRFCVEHLPT TGSNMTLEDE  180
DGSEYDAKYI GSRSGLSGGW RAFALEHKLD DGDALVFELV EPARFKIYIV RAFPNVDEEE  240
SEEENATTLE PKGEAQNEIA KPKTRSSQKQ MQKMSEVSTA LESKDEAQNK IVKPKTRSSH  300
KQMQKMSEVS TALESKDEAQ NEIVKPKTRS SQKQMQKMSE VSTGLESKEE ALGTVKPKAV  360
AKLSNKKKKS KEGNECEIDH SINTEQLLPK DNVVETVDAN MSKKKEHDLE STKDKPDEKR  420
APKFFRKKSA PKFFRKRV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2219
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029124522.11e-131putative B3 domain-containing protein At5g58280
TrEMBLA0A2K3P8L11e-144A0A2K3P8L1_TRIPR; B3 domain-containing protein
STRINGXP_004490734.11e-128(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124332328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-53B3 family protein