PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22171
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 241aa    MW: 27009.5 Da    PI: 4.5762
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22171genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-182676155
                        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               ++ykGVr +k +g+Wv+eIr p++   r r++lg++++ae+Aa+a +aa  +l+g
  Tp57577_TGAC_v2_mRNA22171 26 KKYKGVRLRK-WGKWVCEIRLPNS---RERIWLGSYDSAEKAARAFDAALYCLRG 76
                               59******99.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.48E-292686No hitNo description
PROSITE profilePS5103221.7072784IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-202785IPR016177DNA-binding domain
PfamPF008471.0E-112776IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-292785IPR001471AP2/ERF domain
SMARTSM003803.2E-292790IPR001471AP2/ERF domain
PRINTSPR003676.0E-92839IPR001471AP2/ERF domain
PRINTSPR003676.0E-95066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDINQVTTHQ IKTSSSSSST LSGNNKKYKG VRLRKWGKWV CEIRLPNSRE RIWLGSYDSA  60
EKAARAFDAA LYCLRGPNAA FNFPDTPFNL DINVASNNSL THQEIREIAA NFANKNLPTV  120
IDNNNNNVNI NNNGNGNVGN GNVDESNIVK EISGSSSSTM NDNGNMIDWT FLNMLDGSSD  180
NVGTENYGSF YSDLEKMHSG ELLYSIPPPF FEDYNHQNEI VDNDNDDPFF HQSFLWNWNF  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-162184872Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA22171
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603247.24e-86ethylene-responsive transcription factor ERF017
TrEMBLA0A2K3MXN61e-145A0A2K3MXN6_TRIPR; Ap2/erf domain-containing transcription factor
STRINGAES734981e-85(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.15e-40ERF family protein