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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA2216 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 305aa MW: 34558.9 Da PI: 6.789 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 1e-19 | 117 | 167 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f taeeAa a+++a+ kl+ge Tp57577_TGAC_v2_mRNA2216 117 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAAFAYDNAAYKLRGE 167 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.64E-33 | 116 | 175 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.2E-32 | 117 | 175 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.998 | 117 | 174 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-37 | 117 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-23 | 117 | 175 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-12 | 118 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-11 | 118 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-11 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MSTAINIHNS NKNITHGFLD PYNEELMKAL EPFIKSDSSL ISSSTHQQSH FPSTSYSPFS 60 PNYFTYETQT SSIGLNQLTP SQILQIQTQI QIPQKSHLSQ KPVSMKHFST PSKPMKLYRG 120 VRQRHWGKWV AEIRLPKNRT RLWLGTFETA EEAAFAYDNA AYKLRGEFAR LNFPHMSHHE 180 NYNPLPSSVD SKLQAICETL AISQKQGKQG NNEKPCSSVV EDVKPVVCIP TKPKDELVCH 240 KFEDFKVDNE KTMISSMSDE CSTCLSSPES GVTFLDFSDS SHWDEVENFG LKKYPSVEID 300 WEAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 116 | 174 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-22 | 116 | 174 | 4 | 63 | ATERF1 |
3gcc_A | 2e-22 | 116 | 174 | 4 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA2216 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU443964 | 0.0 | GU443964.1 Trifolium repens clone BAC 88n22 myo-inositol-1-phosphate synthase, bristled-like protein, ethylene insensitive-like protein, bZIP transcription factor, acyl-coA oxidase, and dehydration responsive element binding protein genes, complete cds; and unknown genes. | |||
GenBank | GU443966 | 0.0 | GU443966.1 Trifolium repens clone BAC 113f04 bristled-like protein, ethylene insensitive-like protein, bZIP transcription factor, acyl-coA oxidase, and dehydration responsive element binding protein genes, complete cds; and unknown gene. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004504059.1 | 1e-149 | ethylene-responsive transcription factor ERF060 | ||||
Swissprot | O65665 | 1e-80 | ERF60_ARATH; Ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | D3YBE7 | 0.0 | D3YBE7_TRIRP; Dehydration responsive element binding protein | ||||
STRING | XP_004504059.1 | 1e-148 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 2e-59 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA2216 |