PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA21936
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARF
Protein Properties Length: 687aa    MW: 77102.3 Da    PI: 7.6842
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA21936genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.2e-23126227199
                                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                f k+lt+sd+++ g +++p+ +ae++        +++ +  +  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD
  Tp57577_TGAC_v2_mRNA21936 126 FAKTLTQSDANNGGGFSVPRYCAETIfprldyAADPPLQ-NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLIAGD 208
                                89*****************************95455553.7999**************************************** PP

                                EEEEEE-SSSEE..EEEEE-S CS
                         B3  79 fvvFkldgrsefelvvkvfrk 99 
                                ++vF   + +++ l+v+++r+
  Tp57577_TGAC_v2_mRNA21936 209 SIVFL--RAENGDLCVGIRRA 227
                                *****..4488999****997 PP
2Auxin_resp110.12.3e-36292375183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                                a++ a++k++FevvY+Prast+eF+vk+  ve+a++++++ G Rfkmafetedss++++ +G+v+gv+ +dp+ WpnS+Wr+L+
  Tp57577_TGAC_v2_mRNA21936 292 AVTLAANKQPFEVVYYPRASTPEFCVKAPLVEAAMQMRWCSGIRFKMAFETEDSSRISWfMGIVSGVQFVDPLLWPNSPWRLLQ 375
                                67899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-35118229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-29118259IPR015300DNA-binding pseudobarrel domain
CDDcd100176.44E-21125226No hitNo description
PfamPF023622.7E-21126227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.802126228IPR003340B3 DNA binding domain
SMARTSM010191.1E-20126228IPR003340B3 DNA binding domain
PfamPF065075.3E-31292375IPR010525Auxin response factor
PROSITE profilePS5174518.998605686IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MNTFMDSREN NNNKSSEEVE RCLDPQLWHA CAGGMVQMPT VNSKVYYFPQ GHAEHACGPV  60
NFINCPKVSP LIPCKVVSIK YMADPETDEV YAKLKLFPLS GNGNGNDVQD YYCNDVVENQ  120
DKPVSFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYAAD PPLQNILAKD VHGETWKFRH  180
IYRGTPRRHL LTTGWSTFVN HKKLIAGDSI VFLRAENGDL CVGIRRAKKG IGGGHEDPSG  240
WNPVGENFPL PWFTQNENQM MRNINDNNRN GLNSSPNVTG RAKVRPDAVL EAVTLAANKQ  300
PFEVVYYPRA STPEFCVKAP LVEAAMQMRW CSGIRFKMAF ETEDSSRISW FMGIVSGVQF  360
VDPLLWPNSP WRLLQVKWDE PDLLQNVRRV SPWLVELVAN IPSINLSPFS QPRKKLRLSP  420
HQDFPFDSQI PVPTFPNNLL GPSNVFRCLP ENTPAGMQGA RHAHYGLPIS DHHLSKVQSG  480
LFSAGFVPFD HATKLPTVSN NLMMQKSSMS ENVSCLLSMA SSTQSSQKFD DKKPQLVLFG  540
QKILTEQQIS GVRSSDGNAD KMSNFSDGSR TPLHQQGLQK HPSCDSFPRY KDNNQETETS  600
LESTTDHCKV FLESEDVGRT IDLSLLESYD ELYRKLAEMF GIDKYEKVSR VLYRDISGAV  660
KNIGDEPFSK FTRTARRLTI LMDSRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-772339651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA21936
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468193.10.0auxin response factor 18 isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2K3P4590.0A0A2K3P459_TRIPR; Auxin response factor
STRINGXP_004497510.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]